Baby Bean Bunny appeared in the late 1989/1990 seasons of Muppet Babies as a baby version of Bean Bunny. He joined the other babies in the nursery, and often appeared innocent and rather naive in contrast to the others. According to the episode "The Transcontinental Whoo-Whoo," Baby Bean Bunny is one of the only characters who is toilet-trained. In contrast to his puppet counterpart, Bean has bright blue eyes, instead of black button eyes.
- Episode 613: Quoth the Weirdo
- Episode 616: Puss 'n Boots 'n Babies
- Episode 701: Muppet Babies: The Next Generation
- Episode 702: Buckskin Babies (fantasy sequence only)
- Episode 703: Sing a Song of Superheroes
- Episode 704: Gonzee's Playhouse Channel
- Episode 705: Kermit Pan
- Episode 706: Whose Tale Is It, Anyway?
- Episode 707: At the Movies
- Episode 708: In Search of the Bronzed Beetle
- Episode 709: The Transcontinental Whoo-Whoo
- Episode 710: Get Me to the Perch on Time